| Kind | ICAO | FAA | IATA | City | Name | Latitude | Longitude | Max Runway | Airlines |
|---|---|---|---|---|---|---|---|---|---|
| Closed | Jägala Highway Strip | 59.398(N) | 25.291(E) | ||||||
| Small | EERD | Riidaja | 58.085(N) | 25.899(E) | |||||
| Closed | Aste | Aste Air Base | 58.365(N) | 22.445(E) | |||||
| Medium | Haapsalu | Tokhaapsalu Air Base | 58.911(N) | 23.489(E) | |||||
| Small | EEHA | Humala | Humala Aerodrome | 59.358(N) | 24.380(E) | ||||
| Small | EEJI | Jõhvi | Jõhvi Airfield | 59.329(N) | 27.397(E) | ||||
| Medium | EEKA | KDL | Kärdla | KARDLA | 58.991(N) | 22.831(E) | 4987 ft | ||
| Small | EEKI | Karksi | lennuväli | 58.116(N) | 25.553(E) | ||||
| Medium | EEEI | Keila | AMARI | 59.260(N) | 24.208(E) | 6562 ft | |||
| Small | Kunda | Kunda Air Base | 59.537(N) | 26.312(E) | |||||
| Medium | EEKE | URE | Kuressaare | KURESSAARE | 58.230(N) | 22.509(E) | 4980 ft | ||
| Small | EENA | Narva | Narva Estonia Airport | 59.389(N) | 28.114(E) | ||||
| Small | Nässuma | Nässuma Airstrip | 58.284(N) | 22.818(E) | |||||
| Small | EENI | Nurmsi | Nurmsi Airport | 58.865(N) | 25.730(E) | ||||
| Medium | EEPU | EPU | Pärnu | PARNU | 58.419(N) | 24.473(E) | 8136 ft | ||
| Small | EERE | Rakvere | Rakvere Airport | 59.365(N) | 26.359(E) | ||||
| Small | EERA | Rapla | Rapla Airfield | 58.986(N) | 24.724(E) | ||||
| Small | EERU | Ringsu | Ruhnu Airfield | 57.784(N) | 23.266(E) | ||||
| Small | EELU | Saare | Lyckholm Airport | 59.022(N) | 23.578(E) | ||||
| Small | EEKU | Saareküla | Kihnu Airfield | 58.148(N) | 24.003(E) | ||||
| Small | EERI | Suurküla | Ridali Airfield | 57.940(N) | 26.979(E) | ||||
| Large | EETN | TLL | Tallinn | TALLINN | 59.413(N) | 24.833(E) | 10072 ft | 34 | |
| Small | EETA | Tapa | Tapa Airfield | 59.241(N) | 25.962(E) | ||||
| Medium | EETU | TAY | Tartu | TARTU | 58.307(N) | 26.690(E) | 4524 ft | 1 | |
| Closed | EETR | Tartu | Raadi Airfield | 58.405(N) | 26.776(E) | ||||
| Closed | Torva | Tõrva Air Base | 58.190(N) | 25.948(E) | |||||
| Closed | Valga | Valga Air Base | 57.813(N) | 26.077(E) | |||||
| Small | EEVU | Varstu | Varstu Airport | 57.633(N) | 26.671(E) | ||||
| Small | EEVI | Viljandi | Viljandi Airfield | 58.350(N) | 25.493(E) | ||||
| Closed | Vohma | Vohma Air Base | 58.662(N) | 25.587(E) |